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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25755945_25767061_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25755945 - 25767061
Intron Length:
11117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCACTGCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACTG
Flanking Amino Acid:
TFQLRGLEFRGTYCQQREVE
Intron Amino Acid Position:
1344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
57.7
0.17
1.1
55.8
38.9
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
55.1
0.02
1.9
66.82
41.6

Associated Gene:

Gene:
PCNX2
Ensembl Gene ID:
ENSAPLG00000008853
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029317
25732812 - 25882516
149705
ENSAPLT00000009303
25732812 - 25882516
149705