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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25767229_25780781_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25767229 - 25780781
Intron Length:
13553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
AGCATTTGACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATAATCTCAACT
Flanking Amino Acid:
RPIKFWEKNYKSLQESLCGD
Intron Amino Acid Position:
1312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.5
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
48.9
-0
1.2
45.8
44.4
Minor 5ss
37.3
-1.4
3.2
48.7
41.3
Minor BPS
61.7
0.45
1.6
76.47
39.5

Associated Gene:

Gene:
PCNX2
Ensembl Gene ID:
ENSAPLG00000008853
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029317
25732812 - 25882516
149705