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Intron Name: Anas_platyrhynchos_platyrhynchos_3_25780919_25785536_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

25780919 - 25785536

Intron Length:

4618

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TTT|GCAATACCT

5'SS Class:

weak_major

3'SS Sequence:

CCTTAACTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

GTTACCTTAACT

Flanking Amino Acid:

SSFHVFAQLFFSDSAMLFFQ

Intron Amino Acid Position:

1246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.4

56.6

41.6

Major BPS

71.6

0.54

33.1

Major PPT

77.1

0.61

0.9

69.8

35.3

Minor 5ss

26.9

-2.7

4.1

46.9

42.3

Minor BPS

85.4

1.19

1.1

94.13

32.8

Associated Gene:

Gene:

PCNX2

Ensembl Gene ID:

ENSAPLG00000008853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009303

25732812 - 25882516

149705

ENSAPLT00000029317

25732812 - 25882516

149705