Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25808357_25814139_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25808357 - 25814139

Intron Length:

5783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGACCT

5'SS Class:

strong_major

3'SS Sequence:

ATAATTTTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTTTGTATAAAA

Flanking Amino Acid:

PLPEKMRESVKEILKSDLIV

Intron Amino Acid Position:

1054

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

70.8

39.2

Major BPS

71.2

0.53

70.3

31.9

Major PPT

0.56

0.9

68.9

41.1

Minor 5ss

34.7

-1.7

3.2

46.8

42.3

Minor BPS

52.1

0.06

2.1

73.43

38.3

Associated Gene:

Gene:

PCNX2

Ensembl Gene ID:

ENSAPLG00000008853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029317

25732812 - 25882516

149705

ENSAPLT00000009303

25732812 - 25882516

149705