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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25826480_25828058_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25826480 - 25828058
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTGTCTTTATTT
Flanking Amino Acid:
QIDMLLFGGSAAAGLVSALY
Intron Amino Acid Position:
954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.7
0.76
0.8
81.4
35
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
63.6
0.5
1.6
76.16
41.2

Associated Gene:

Gene:
PCNX2
Ensembl Gene ID:
ENSAPLG00000008853
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029317
25732812 - 25882516
149705
ENSAPLT00000009303
25732812 - 25882516
149705