Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25845617_25851378_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25845617 - 25851378

Intron Length:

5762

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCTGTGCAG

5'SS Class:

major

3'SS Sequence:

AGATCCAGTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGAGAT

U12 Branch Point Sequence:

TGTGCAGTGAGA

Flanking Amino Acid:

NCDCISNLLSSSSSTTTSES

Intron Amino Acid Position:

709

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.6

0.25

1.3

43.5

44.1

Major BPS

48.5

-0

1.4

46.4

Major PPT

60.7

0.24

1.1

43.7

Minor 5ss

14.8

-4.1

3.6

20.8

37.5

Minor BPS

40.6

-0.7

2.4

55.96

43.2

Associated Gene:

Gene:

PCNX2

Ensembl Gene ID:

ENSAPLG00000008853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009303

25732812 - 25882516

149705