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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25845632_25859446_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25845632 - 25859446
Intron Length:
13815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CCTCTGTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAAACAGT
Flanking Amino Acid:
ISNCDCISNAHEIQFSSSST
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.4
0.53
1
67.9
37.6
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
35.2
-1
2.6
62.86
46.6

Associated Gene:

Gene:
PCNX2
Ensembl Gene ID:
ENSAPLG00000008853
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029317
25732812 - 25882516
149705