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Intron Name: Anas_platyrhynchos_platyrhynchos_3_25859541_25860875_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25859541 - 25860875

Intron Length:

1335

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCGTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TATTTCGTAAAG

Flanking Amino Acid:

DAMHVFIDENGEIRSCYLKA

Intron Amino Acid Position:

676

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

78.7

31.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

69.7

0.44

1.1

71.4

38.5

Minor 5ss

39.8

-1.1

53.4

43.8

Minor BPS

-0

2.2

65.42

42.2

Associated Gene:

Gene:

PCNX2

Ensembl Gene ID:

ENSAPLG00000008853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029317

25732812 - 25882516

149705

ENSAPLT00000009303

25732812 - 25882516

149705