Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25861022_25861189_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25861022 - 25861189

Intron Length:

168

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGGCCA

5'SS Class:

major

3'SS Sequence:

TTTTTGTGTCAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TAGTTTTGAAAC

Flanking Amino Acid:

VLPESAKFTALYQGNRQRQI

Intron Amino Acid Position:

627

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.8

0.4

1.2

56.5

42.2

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

72.1

0.5

1.2

71.5

43.2

Minor 5ss

33.9

-1.8

3.4

49.8

Minor BPS

52.8

0.07

1.5

61.21

37.9

Associated Gene:

Gene:

PCNX2

Ensembl Gene ID:

ENSAPLG00000008853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029317

25732812 - 25882516

149705

ENSAPLT00000009303

25732812 - 25882516

149705