About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25861338_25869622_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25861338 - 25869622
Intron Length:
8285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
CTCTACTTCACT
Flanking Amino Acid:
ETTKENVLVGDSQMTERKEE
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
68.7
0.46
1
71.3
34
Major PPT
80.2
0.68
0.8
71.6
38.2
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
58.2
0.34
2
76.43
46

Associated Gene:

Gene:
PCNX2
Ensembl Gene ID:
ENSAPLG00000008853
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029317
25732812 - 25882516
149705