Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25916755_25919258_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25916755 - 25919258

Intron Length:

2504

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTCTC

5'SS Class:

strong_major

3'SS Sequence:

AATTTTTCCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

ATTCTCTTAATT

Flanking Amino Acid:

TIIPRLRAIQLIPKTDTHTT

Intron Amino Acid Position:

575

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

78.2

36.4

Major BPS

0.92

0.9

86.2

29.1

Major PPT

80.1

0.68

0.8

35.5

Minor 5ss

41.2

-1

3.1

58.3

39.3

Minor BPS

78.1

0.96

1.1

87.57

Associated Gene:

Gene:

MAP3K21

Ensembl Gene ID:

ENSAPLG00000009818

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020301

25884900 - 25926610

41711