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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25916755_25919932_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25916755 - 25919932
Intron Length:
3178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATCCAATCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
TIIPRLRAIQLTSDESNRTW
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
65.6
0.35
0.9
55.7
39.4
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
MAP3K21
Ensembl Gene ID:
ENSAPLG00000009818
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010250
25884900 - 25926610
41711