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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25919376_25919932_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25919376 - 25919932
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATCCAATCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
YELPSGVMKKVTSDESNRTW
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.9
82.8
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
65.6
0.35
0.9
55.7
39.4
Minor 5ss
33.6
-1.9
4.2
55.7
48.5
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
MAP3K21
Ensembl Gene ID:
ENSAPLG00000009818
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020301
25884900 - 25926610
41711