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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25921206_25922931_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25921206 - 25922931
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GTAACGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTCTTAAAGT
Flanking Amino Acid:
VPLASLFVDQGVCTDKRHLP
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
66.5
0.37
1
62.3
44
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
60.2
0.4
2
80.14
42.2

Associated Gene:

Gene:
MAP3K21
Ensembl Gene ID:
ENSAPLG00000009818
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020301
25884900 - 25926610
41711
ENSAPLT00000010250
25884900 - 25926610
41711