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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25954238_25954491_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25954238 - 25954491
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTTCGTATAATA
Flanking Amino Acid:
PEGVAMEVKKTKIEKIPEHI
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.7
0.82
0.6
85.4
21.9
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
47.5
-0.1
2
62.35
38

Associated Gene:

Gene:
MRPS10
Ensembl Gene ID:
ENSAPLG00000015030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031880
25954151 - 25960133
5983
ENSAPLT00000017435
25954151 - 25959920
5770
ENSAPLT00000015705
25954151 - 25957337
3187
ENSAPLT00000042877
25954151 - 25960305
6155