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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25955677_25956139_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25955677 - 25956139
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
AGTATTACAACA
Flanking Amino Acid:
AKELGISVEKIHRPPKKIER
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
69.1
0.48
1
70
32.1
Major PPT
74.8
0.56
1
72.8
42.2
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
45.4
-0.3
1.7
56.4
36.1

Associated Gene:

Gene:
MRPS10
Ensembl Gene ID:
ENSAPLG00000015030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015705
25954151 - 25957337
3187
ENSAPLT00000042877
25954151 - 25960305
6155
ENSAPLT00000031880
25954151 - 25960133
5983
ENSAPLT00000017435
25954151 - 25959920
5770