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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25956280_25957232_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25956280 - 25957232
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CCATTCTTAAAC
Flanking Amino Acid:
QTQEHKTNPLVTISEEPETL
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72
0.49
0.9
67.3
37.1
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
62.6
0.38
1.4
63.76
41.8

Associated Gene:

Gene:
MRPS10
Ensembl Gene ID:
ENSAPLG00000015030
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015705
25954151 - 25957337
3187