About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25964411_25965070_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25964411 - 25965070
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
TTIFPCKECGKVFFKIKSRN
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
71.9
0.49
1
68.2
42
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
TRERF1
Ensembl Gene ID:
ENSAPLG00000014876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033396
25963867 - 26033503
69637
ENSAPLT00000015521
25963867 - 26033503
69637