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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25973036_25974215_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25973036 - 25974215
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCTGCTTATTC
Flanking Amino Acid:
SLFEAKGDIMVTLEKLLLRK
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.8
0.58
0.9
74.4
35.3
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
55.7
0.16
2
69.6
42.7

Associated Gene:

Gene:
TRERF1
Ensembl Gene ID:
ENSAPLG00000014876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033396
25963867 - 26033503
69637
ENSAPLT00000015521
25963867 - 26033503
69637