Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25975183_25975817_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25975183 - 25975817

Intron Length:

635

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTAAGAAAA

5'SS Class:

major

3'SS Sequence:

TTTGTTCTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTGAAT

U12 Branch Point Sequence:

CATGCTTGAATA

Flanking Amino Acid:

TPGPGEQTVEPRINIGSRFQ

Intron Amino Acid Position:

754

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.3

68.2

38.6

Major BPS

62.3

0.31

1.4

73.3

39.1

Major PPT

85.5

0.8

0.7

80.8

31.3

Minor 5ss

34.7

-1.7

45.1

42.9

Minor BPS

53.6

0.11

1.5

60.79

39.9

Associated Gene:

Gene:

TRERF1

Ensembl Gene ID:

ENSAPLG00000014876

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015521

25963867 - 26033503

69637

ENSAPLT00000033396

25963867 - 26033503

69637