Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25975879_25977838_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25975879 - 25977838

Intron Length:

1960

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTGCT

5'SS Class:

major

3'SS Sequence:

ATCTCTGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAC

U12 Branch Point Sequence:

TACGTCGTAATC

Flanking Amino Acid:

PTPRVLLCRSNSIDGSVIPV

Intron Amino Acid Position:

734

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

72.9

36.6

Major BPS

70.5

0.51

33.1

Major PPT

79.8

0.67

0.9

76.9

36.7

Minor 5ss

37.5

-1.4

3.3

56.3

41.9

Minor BPS

47.8

-0.1

2.1

58.13

41.7

Associated Gene:

Gene:

TRERF1

Ensembl Gene ID:

ENSAPLG00000014876

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033396

25963867 - 26033503

69637

ENSAPLT00000015521

25963867 - 26033503

69637