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Intron Name: Anas_platyrhynchos_platyrhynchos_3_25978209_25982787_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25978209 - 25982787

Intron Length:

4579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCAGTT

5'SS Class:

major

3'SS Sequence:

TGTTTTCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAATAT

U12 Branch Point Sequence:

CATGGCTAAATA

Flanking Amino Acid:

GVRASPNFKQEISKKPHQSA

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.2

69.9

41.1

Major BPS

59.7

0.24

1.1

55.7

39.9

Major PPT

83.6

0.76

0.7

82.3

29.8

Minor 5ss

40.5

-1.1

3.8

64.3

47.2

Minor BPS

45.7

-0.3

2.1

55.47

44.3

Associated Gene:

Gene:

TRERF1

Ensembl Gene ID:

ENSAPLG00000014876

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033396

25963867 - 26033503

69637