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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25982939_25983681_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25982939 - 25983681
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
AAACAAACAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
CCATGCTAAAAA
Flanking Amino Acid:
GRLQPLSPEQSGQNRETLPE
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
62
0.3
1
62.3
30.4
Major PPT
47.4
-0.1
1
35.1
33.6
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
44.9
-0.3
2.1
52.77
45.3

Associated Gene:

Gene:
TRERF1
Ensembl Gene ID:
ENSAPLG00000014876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033396
25963867 - 26033503
69637
ENSAPLT00000015521
25963867 - 26033503
69637