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Intron Name: Anas_platyrhynchos_platyrhynchos_3_25985994_25993748_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

25985994 - 25993748

Intron Length:

7755

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGTTG

5'SS Class:

strong_major

3'SS Sequence:

TGTTGCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTTAC

U12 Branch Point Sequence:

CAGCACTTACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

72.3

39.7

Major BPS

61.4

0.28

33.7

Major PPT

0.52

0.9

65.6

36.2

Minor 5ss

40.4

-1.1

3.3

55.5

48.6

Minor BPS

47.4

-0.2

1.8

53.93

43.5

Associated Gene:

Gene:

TRERF1

Ensembl Gene ID:

ENSAPLG00000014876

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033396

25963867 - 26033503

69637

ENSAPLT00000015521

25963867 - 26033503

69637