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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25993847_26033447_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25993847 - 26033447
Intron Length:
39601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.6
0.58
1
74.4
40.4
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
TRERF1
Ensembl Gene ID:
ENSAPLG00000014876
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033396
25963867 - 26033503
69637
ENSAPLT00000015521
25963867 - 26033503
69637