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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2602105_2607202_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2602105 - 2607202
Intron Length:
5098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
GTTCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TGCCACTGAACT
Flanking Amino Acid:
AQRMLDEYRNKYRNEREYQQ
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
82.6
0.73
0.9
76.5
37.5
Minor 5ss
37
-1.5
3.5
51.2
39.7
Minor BPS
56
0.27
1.7
72.75
43.2

Associated Gene:

Gene:
BFSP1
Ensembl Gene ID:
ENSAPLG00000015558
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016238
2601734 - 2620592
18859