Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26089946_26092181_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

26089946 - 26092181

Intron Length:

2236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TACTAAATTCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTACTAAATT

Flanking Amino Acid:

IGFATTVDRDGRRSVRYGDF

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

85.3

25.4

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

58.8

0.2

1.2

54.3

43.6

Minor 5ss

37.5

-1.4

2.8

46.9

41.8

Minor BPS

68.7

0.67

1.8

88.84

36.2

Associated Gene:

Gene:

UBR2

Ensembl Gene ID:

ENSAPLG00000013268

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028368

26078444 - 26127211

48768

ENSAPLT00000013967

26078444 - 26127089

48646