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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26092245_26093460_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26092245 - 26093460
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCATTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TAAGCATTACCT
Flanking Amino Acid:
YCDQAKSVIVRNTSRQTKPL
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
69.7
0.44
1
69.7
34.2
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
50.5
0.09
2
71.36
44.9

Associated Gene:

Gene:
UBR2
Ensembl Gene ID:
ENSAPLG00000013268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028368
26078444 - 26127211
48768
ENSAPLT00000013967
26078444 - 26127089
48646