About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26097327_26099851_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26097327 - 26099851
Intron Length:
2525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATATAC
Flanking Amino Acid:
SVQLFTVPTLARMLITEENL
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.4
0.44
1
65.4
40.8
Minor 5ss
32.1
-2
2.8
39.3
41.2
Minor BPS
46.1
-0.3
2.1
64.85
39.8

Associated Gene:

Gene:
UBR2
Ensembl Gene ID:
ENSAPLG00000013268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013967
26078444 - 26127089
48646