Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26104177_26105603_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26104177 - 26105603

Intron Length:

1427

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TGGTTGTAAATC

Flanking Amino Acid:

RRNGFSLVNQIYYYHNVKCR

Intron Amino Acid Position:

677

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

84.4

33.5

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

-1.6

2.6

43.2

43.8

Minor BPS

45.8

-0.3

2.3

57.78

41.9

Associated Gene:

Gene:

UBR2

Ensembl Gene ID:

ENSAPLG00000013268

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028368

26078444 - 26127211

48768

ENSAPLT00000013967

26078444 - 26127089

48646