Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26107347_26108272_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

26107347 - 26108272

Intron Length:

926

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CCACTCAACATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAGTAAC

U12 Branch Point Sequence:

TTCCACTCAACA

Flanking Amino Acid:

SELVKALPEDENRETGMESV

Intron Amino Acid Position:

803

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

78.2

36.4

Major BPS

66.7

0.42

1.2

67.6

36.5

Major PPT

56.6

0.15

0.9

50.6

31.4

Minor 5ss

38.5

-1.3

2.8

50.4

39.2

Minor BPS

57.6

0.23

1.8

70.54

41.1

Associated Gene:

Gene:

UBR2

Ensembl Gene ID:

ENSAPLG00000013268

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028368

26078444 - 26127211

48768

ENSAPLT00000013967

26078444 - 26127089

48646