About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26114736_26116120_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26114736 - 26116120
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATGTGATTAATA
Flanking Amino Acid:
GHIMHAHCWQRYFDAVQAKE
Intron Amino Acid Position:
1179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.2
0.63
0.8
73
32
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
53
0.09
2
66.72
40

Associated Gene:

Gene:
UBR2
Ensembl Gene ID:
ENSAPLG00000013268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028368
26078444 - 26127211
48768
ENSAPLT00000013967
26078444 - 26127089
48646