Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26123357_26124870_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26123357 - 26124870

Intron Length:

1514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACATG

5'SS Class:

strong_major

3'SS Sequence:

GATTTTGTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

GCTTATTAAACT

Flanking Amino Acid:

RYLEGKRHAISYARESNKLI

Intron Amino Acid Position:

1588

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

75.1

41.1

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

74.4

0.55

66.1

44.9

Minor 5ss

42.3

-0.8

56.9

47.4

Minor BPS

55.3

0.25

1.9

73.23

43.7

Associated Gene:

Gene:

UBR2

Ensembl Gene ID:

ENSAPLG00000013268

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028368

26078444 - 26127211

48768

ENSAPLT00000013967

26078444 - 26127089

48646