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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26126193_26126947_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26126193 - 26126947
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATAAGT
Flanking Amino Acid:
DDYGETDQGLRRGNPLHLCK
Intron Amino Acid Position:
1705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
84.5
33
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
41.5
-0.9
3
60.7
43.8
Minor BPS
45.6
-0.2
2.4
73.75
43

Associated Gene:

Gene:
UBR2
Ensembl Gene ID:
ENSAPLG00000013268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028368
26078444 - 26127211
48768
ENSAPLT00000013967
26078444 - 26127089
48646