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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26143309_26146031_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26143309 - 26146031
Intron Length:
2723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TGCCTGCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TGTGCATTGACA
Flanking Amino Acid:
YLDFSSKEVKDRIKSNVDGR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
64.1
0.32
1
57.8
37.6
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
60.8
0.33
1.8
72.63
39

Associated Gene:

Gene:
PRPH2
Ensembl Gene ID:
ENSAPLG00000013186
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013730
26137376 - 26146612
9237