About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26183997_26186378_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26183997 - 26186378
Intron Length:
2382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
TTGCCTAGAAGT
Flanking Amino Acid:
DDESCLLDLIGDPQALNYFL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
85.4
0.8
0.9
91.3
20.9
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
46
-0.2
2
67.2
43.4

Associated Gene:

Gene:
BICRAL
Ensembl Gene ID:
ENSAPLG00000013075
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025070
26183948 - 26203639
19692
ENSAPLT00000013633
26183948 - 26200449
16502
ENSAPLT00000036829
26183948 - 26201145
17198
ENSAPLT00000033355
26183948 - 26200449
16502