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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26186428_26186509_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26186428 - 26186509
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TGTCTTTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAACA
Flanking Amino Acid:
YFLHGPSSKSSNEDLTNAEY
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.9
0.67
0.9
73.9
40.4
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
71.2
0.66
1.6
80.05
35.9

Associated Gene:

Gene:
BICRAL
Ensembl Gene ID:
ENSAPLG00000013075
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033355
26183948 - 26200449
16502
ENSAPLT00000025070
26183948 - 26203639
19692
ENSAPLT00000036829
26183948 - 26201145
17198