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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26186428_26190721_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26186428 - 26190721
Intron Length:
4294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTGTTTATTG
Flanking Amino Acid:
YFLHGPSSKSNTDPKSSVKG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
49.6
-0.1
2
60.98
41.9

Associated Gene:

Gene:
BICRAL
Ensembl Gene ID:
ENSAPLG00000013075
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013633
26183948 - 26200449
16502