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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26186579_26190721_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26186579 - 26190721
Intron Length:
4143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTGTTTATTG
Flanking Amino Acid:
NSNSIFANSNNTDPKSSVKG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
49.6
-0.1
2
60.98
41.9

Associated Gene:

Gene:
BICRAL
Ensembl Gene ID:
ENSAPLG00000013075
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033355
26183948 - 26200449
16502
ENSAPLT00000025070
26183948 - 26203639
19692
ENSAPLT00000036829
26183948 - 26201145
17198