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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26195358_26197165_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26195358 - 26197165
Intron Length:
1808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
ATTTTGTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
GASSVQQSVQVDGHLVGQKR
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
70
0.45
1
63
42.7
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
BICRAL
Ensembl Gene ID:
ENSAPLG00000013075
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025070
26183948 - 26203639
19692
ENSAPLT00000013633
26183948 - 26200449
16502
ENSAPLT00000036829
26183948 - 26201145
17198