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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26197228_26197374_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26197228 - 26197374
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
ATTTTCATTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATACCATTAATT
Flanking Amino Acid:
PAAKQLTKGAFILQQLQKDQ
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
72.7
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80.3
0.68
0.8
75.4
33.7
Minor 5ss
38.5
-1.3
3.1
56.2
42.2
Minor BPS
64.8
0.54
1.6
78.58
36.9

Associated Gene:

Gene:
BICRAL
Ensembl Gene ID:
ENSAPLG00000013075
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025070
26183948 - 26203639
19692
ENSAPLT00000013633
26183948 - 26200449
16502
ENSAPLT00000036829
26183948 - 26201145
17198
ENSAPLT00000033355
26183948 - 26200449
16502