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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26197780_26199124_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26197780 - 26199124
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAA
U12 Branch Point Sequence:
GTTACCTCAAAG
Flanking Amino Acid:
YRCLLIEDAMRINPSAEMVM
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.2
39.9
Major BPS
64.3
0.36
1
65.6
31.9
Major PPT
85.8
0.81
0.7
80.7
24.6
Minor 5ss
38.6
-1.3
3.4
52.7
46.4
Minor BPS
55.6
0.04
1.8
63.28
43.6

Associated Gene:

Gene:
BICRAL
Ensembl Gene ID:
ENSAPLG00000013075
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025070
26183948 - 26203639
19692
ENSAPLT00000013633
26183948 - 26200449
16502
ENSAPLT00000036829
26183948 - 26201145
17198
ENSAPLT00000033355
26183948 - 26200449
16502