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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2627047_2631191_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2627047 - 2631191
Intron Length:
4145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTGACCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATCTTTTGACC
Flanking Amino Acid:
HCVGGSIQEPEKIPPSGKLL
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
81.4
0.71
0.8
74.8
35.1
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
65.9
0.48
1.2
71.44
33.4

Associated Gene:

Gene:
PCSK2
Ensembl Gene ID:
ENSAPLG00000014969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015649
2626560 - 2727776
101217