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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26308127_26325158_F

Intron Information:

Intron Rank:
148747
Intron Class:
major
Intron Phase:
Intron Coordinates:
26308127 - 26325158
Intron Length:
17032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
GGATTTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TGTTTGTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
72.3
0.5
0.9
66.4
40.5
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
45.8
-0.2
2.5
72.98
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030071
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036130
26307523 - 26328823
21301