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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2634054_2635360_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2634054 - 2635360
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
AATATCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
GTTTCATTAATT
Flanking Amino Acid:
GRKRNPEAGVATTDLYGNCT
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
79.4
0.73
1
80.1
32
Major PPT
71.7
0.49
1
63.7
41.7
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
76.8
0.92
1.5
90.31
33.1

Associated Gene:

Gene:
PCSK2
Ensembl Gene ID:
ENSAPLG00000014969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015649
2626560 - 2727776
101217