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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26399610_26402922_F

Intron Information:

Intron Rank:
149588
Intron Class:
major
Intron Phase:
Intron Coordinates:
26399610 - 26402922
Intron Length:
3313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030491
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031270
26399541 - 26429078
29538