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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26403018_26426560_F

Intron Information:

Intron Rank:
149589
Intron Class:
major
Intron Phase:
Intron Coordinates:
26403018 - 26426560
Intron Length:
23543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTAGA
5'SS Class:
strong_major
3'SS Sequence:
AATTACATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCGTATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.2
0.48
1
60.2
44.7
Minor 5ss
40.6
-1
2.6
51.9
44.6
Minor BPS
58.7
0.35
1.5
67.86
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030491
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040936
26357779 - 26427043
69265
ENSAPLT00000031270
26399541 - 26429078
29538