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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26447329_26450189_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26447329 - 26450189
Intron Length:
2861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTGCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTTTTTGCATT
Flanking Amino Acid:
LQTSWEDRFRICLSLVRLLH
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.1
35.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
37.3
-1.4
2.7
42.3
38.4
Minor BPS
49.4
0.04
1.9
72.62
39

Associated Gene:

Gene:
PKDCC
Ensembl Gene ID:
ENSAPLG00000012985
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013528
26429213 - 26466489
37277