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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_26454852_26463737_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26454852 - 26463737
Intron Length:
8886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TGGTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAT
U12 Branch Point Sequence:
ATTGCTCTACTC
Flanking Amino Acid:
LQNTTRIPKAEYRRVPEAFI
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
66.2
0.4
1.3
57.4
49.1
Major PPT
80.7
0.69
0.9
77.7
40.6
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
46.7
-0.2
2
60.7
39.4

Associated Gene:

Gene:
PKDCC
Ensembl Gene ID:
ENSAPLG00000012985
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013528
26429213 - 26466489
37277