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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2646180_2648793_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2646180 - 2648793
Intron Length:
2614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCG
5'SS Class:
major
3'SS Sequence:
ATTAAATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGCTGATTAAAT
Flanking Amino Acid:
VGVAYNSKVAGIRMLDQPFM
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.5
42.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.1
0.39
1
58.8
41.2
Minor 5ss
35.3
-1.7
3.5
47.7
48
Minor BPS
49.5
0.04
2.1
71.29
45

Associated Gene:

Gene:
PCSK2
Ensembl Gene ID:
ENSAPLG00000014969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015649
2626560 - 2727776
101217